Echinoderms Part B - Hamdoun, Amr

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Auteur(s) : Hamdoun, Amr

Editeur : Elsevier Inc

Langue : Anglais

Parution : 01/04/2019

Format : Moyen, de 350g à 1kg

Nombre de pages : 552.0

Expédition : 1390

ISBN : 9780128170724

Résumé :

Echinoderms, Volume 151, the latest release in the Methods in Cell Biology series, highlights advances in the field, with this update presenting chapters on Echinoderm Genome Databases, analysis of gene regulatory networks, using ATAC-seq and RNA-seq to increase resolution in GRN connectivity, multiplex cis-regulatory analysis, experimental approaches GRN/signal pathways, BACs, analysis of chromatin accessibility using ATAC-seq, analysis of sea urchin proteins /Click IT, CRISPR/Cas9-mediated genome editing in sea urchins, super-resolution and in toto imaging of echinoderm embryos, and methods for analysis of intracellular ion signals in sperm, eggs and embryos.

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Sommaire:

1. Fertilization
When sperm meets egg-Fifty years of surprises
David Epel
Early and later studies on action potential and fertilization potential of echinoderm oocytes and Ca²⁺ response of mammalian oocytes
Shunichi Miyazaki
My research career on (mainly) sea urchins
Victor D. Vacquier

2. Cytokenesis and Embryology
Echinoderm eggs as a model for discoveries in cell biology
David R. Burgess
Unlocking mechanisms of development through advances in tools
David McClay
From hemoglobin to urchin spicules
Fred Wilt

3. Genomics and Morphogenesis
The causes of things
Robert D. Burke
A personal history of the echinoderm genome sequencing
R. Andrew Cameron

Section 1 - Methods for genome and transcriptome analysis
1. Genomic resources for the study of echinoderm development and evolution
Gregory A. Cary, R. Andrew Cameron and Veronica F. Hinman
2. Methods for the experimental and computational analysis of gene regulatory networks in sea urchins
Isabelle S. Peter
3. Using ATAC-seq and RNA-seq to increase resolution in GRN connectivity
Elijah K. Lowe, Claudia Cuomo, Danila Voronov and Maria I. Arnone
4. Identifying gene expression from single cells to single genes
Nathalie Oulhen, Stephany Foster, Greg Wray and Gary Wessel
5. Multiplex cis-regulatory analysis
Jongmin Nam
6. Whole mount in situ hybridization techniques for analysis of the spatial distribution of mRNAs in sea urchin embryos and early larvae
Eric M. Erkenbrack, Jenifer C. Croce, Esther Miranda, Sujan Gautam, Marina Martinez-Bartolome, Shunsuke Yaguchi and Ryan C. Range
7. Techniques for analyzing gene expression using BAC-based reporter constructs
Katherine M. Buckley and Charles A. Ettensohn
8. Genome-wide analysis of chromatin accessibility using ATAC-seq
Tanvi Shashikant and Charles A. Ettensohn

Section 2 - Genome-editing and proteomics
9. Expression of exogenous mRNAs to study gene function in echinoderm embryos
Maria Dolores Molina, Christian Gache and Thierry Lepagef
10. Trapping, tagging and tracking: Tools for the study of proteins during early development of the sea urchin
Michelle M. Roux-Osovitz, Kathy R. Foltz, Nathalie Oulhen and Gary Wessel
11. CRISPR/Cas9-mediated genome editing in sea urchins
Che-Yi Lin, Nathalie Oulhen, Gary Wessel and Yi-Hsien Su
12 .Analysis of microRNA functions
Carolyn Remsburg, Kalin Konrad, Nina Faye Sampilo and Jia L. Song
13. In vivo analysis of protein translation activity in sea urchin eggs and embryos
H?lo?se Chass?, Sandrine Boulben, Virginie Glippa, Florian Pontheaux, Patrick Cormier and Julia Morales
14. Generation, expression and utilization of single-domain antibodies for in vivo protein localization and manipulation in sea urchin embryos
Catherine S. Schrankel, Tufan G?kirmak, Chang-Wook Lee, Geoffrey Chang and Amro Hamdoun

Section 3 - Imaging of echinoderm embryos
15. Live-cell fluorescence imaging of echinoderm embryos
Silvia P. Sep?lveda-Ram?rez, Leslie Toledo-Jacobo, Chelsea Garno, Debadrita Pal, Clara Ross,
Andrea Ellis and Charles B. Shuster
16. 3D?+?time imaging of normal and twin sea urchin embryos for the reconstruction of their cell lineage
Antonio Ortiz, Elena Kardash and Nadine Peyri?ras
17. High resolution imaging of the cortex isolated from sea urchin eggs and embryos
J.H. Henson, Bakary Samasa and E.C. Burg
18. Spatially mapping gene expression in sea...